rs46224897 SNP Detail

Summary

• ID
  rs46224897
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84422553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC TTGGGAGGCA GAGGCAGGCG
  A
  ATTTCTGAGT TCGAGGTACC CCTGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145360168	ENSMUSSNP1650384	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46224897					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84422553 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20652	CpG island 20652	1922 bp proximal
Pkn1	protein kinase N1	within coordinates
Rr666287	regulatory region 666287	1607 bp distal
Rr666288	regulatory region 666288	152 bp distal
Rr666289	regulatory region 666289	1340 bp proximal
Tssr82046	transcription start site region 82046	1880 bp upstream