rs46225120 SNP Detail

Summary

• ID
  rs46225120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67146058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATC TTAGGGGAAA ACAGACTTCC
  Y
  TAATCAGCGG ATAGGTAGAG TTCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132326631	ENSMUSSNP3606664	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss323719236	CHEV_11_67068734	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46225120					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67146058 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Tssr3528	transcription start site region 3528	489 bp downstream
Tssr3529	transcription start site region 3529	433 bp downstream
Tssr102201	transcription start site region 102201	1714 bp downstream
Tssr102202	transcription start site region 102202	1225 bp downstream
Tssr102203	transcription start site region 102203	1162 bp downstream
Tssr102204	transcription start site region 102204	766 bp downstream
Tssr102205	transcription start site region 102205	549 bp downstream
Tssr102206	transcription start site region 102206	445 bp downstream
Tssr102207	transcription start site region 102207	189 bp upstream
Tssr102208	transcription start site region 102208	359 bp upstream
Tssr102209	transcription start site region 102209	394 bp upstream
Tssr102210	transcription start site region 102210	412 bp upstream
Tssr102211	transcription start site region 102211	422 bp upstream
Tssr102212	transcription start site region 102212	444 bp upstream
Tssr102213	transcription start site region 102213	596 bp upstream
Tssr102214	transcription start site region 102214	952 bp upstream
Tssr102215	transcription start site region 102215	966 bp upstream
Tssr102216	transcription start site region 102216	1010 bp upstream
Tssr102217	transcription start site region 102217	1164 bp upstream
Tssr102218	transcription start site region 102218	1875 bp upstream
Tssr102219	transcription start site region 102219	1962 bp upstream
Tssr108536	transcription start site region 108536	1178 bp upstream
Tssr108537	transcription start site region 108537	1157 bp upstream
Tssr108538	transcription start site region 108538	647 bp upstream
Tssr108539	transcription start site region 108539	449 bp upstream
Tssr108540	transcription start site region 108540	391 bp upstream
Tssr108541	transcription start site region 108541	203 bp downstream
Tssr108542	transcription start site region 108542	364 bp downstream
Tssr108543	transcription start site region 108543	479 bp downstream
Tssr108544	transcription start site region 108544	1062 bp downstream
Tssr108545	transcription start site region 108545	1994 bp downstream