rs46225373 SNP Detail

Summary

• ID
  rs46225373
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41288084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTT TCCTAGCCCC TCTCTATCCT
  A
  GATCTATTCT GATTTGAATC TCTCT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136353032	ENSMUSSNP5622093	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322925109	CHEV_9_41184871	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46225373					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41288084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21612	CpG island 21612	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677030	regulatory region 677030	1304 bp distal
Rr677031	regulatory region 677031	144 bp distal
Tssr84498	transcription start site region 84498	382 bp downstream
Tssr84499	transcription start site region 84499	354 bp downstream
Tssr84500	transcription start site region 84500	303 bp downstream
Tssr84501	transcription start site region 84501	291 bp downstream
Tssr84502	transcription start site region 84502	110 bp upstream
Tssr84503	transcription start site region 84503	1644 bp upstream