rs46227117 SNP Detail

Summary

• ID
  rs46227117
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48038377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTCAGAGG ACAGATCCAA GGAGTCAGGG CCTCCTTCTA
  CCCTATGGTA CTAGGAGCTA CACTCAAGTC TTCAGGCTTG GCAGCAAGCC CCTTTCCCTG
  K
  TAAGCCATCT TGCCAGGCCT GCTACCTGGT AGTTTCTTGG GTGAAAGGCC AGCTAGCTTA
  AGCTAGCATG GTGCAACCGC AGTACAGGTG AATGGTGTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145708960	ENSMUSSNP4290257	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325406538	CHEV_17_47864401	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46227117					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48038377 () rs orientation: forward

Symbol	Name	Function Class
D17Mit201	DNA segment, Chr 17, Massachusetts Institute of Technology 201	117 bp distal
Pgc	progastricsin (pepsinogen C)	within coordinates
Tssr5147	transcription start site region 5147	1298 bp upstream
Tssr5148	transcription start site region 5148	1858 bp downstream
Tssr145003	transcription start site region 145003	604 bp downstream
Tssr145004	transcription start site region 145004	1280 bp upstream
Tssr145005	transcription start site region 145005	1308 bp upstream
Tssr145006	transcription start site region 145006	1317 bp upstream
Tssr145007	transcription start site region 145007	1344 bp upstream
Tssr145008	transcription start site region 145008	1378 bp upstream
Tssr145009	transcription start site region 145009	1395 bp upstream
Tssr145010	transcription start site region 145010	1798 bp upstream
Tssr145011	transcription start site region 145011	1811 bp upstream
Tssr145012	transcription start site region 145012	1823 bp upstream
Tssr145013	transcription start site region 145013	1842 bp upstream
Tssr148459	transcription start site region 148459	1344 bp downstream
Tssr148460	transcription start site region 148460	1365 bp downstream
Tssr148461	transcription start site region 148461	1404 bp downstream
Tssr148462	transcription start site region 148462	1423 bp downstream
Tssr148463	transcription start site region 148463	1826 bp downstream
Tssr148464	transcription start site region 148464	1904 bp downstream