rs46227666 SNP Detail

Summary

• ID
  rs46227666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72535696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAAGTGG AATTCACTTC
  TTCCCCTAGG GGTTTGTGGC CTTTGGACTG CAGTGATAGA CAAGAGAGAG TCTTTCTGGA
  GCTTGATTTT TTTTGTAGGG GTGGGGTGGG AGGGCTCTTC CTGCCTGTTT CTCAGAACTG
  TTGGTAGAGA CAACTGGGTA ACCCATGATT CCAGGTGAGG ACTGAATTGT GTCTGTGTCA
  Y
  ACTGGGAACT GTCTTTCCTC TCCAGGTCTC TGATGCCACT GGACAGATGA ATCTGACCAA
  GGTGGCTGAC TCCAGCCCTT TTGCCTCTGA ACTGCTAATT CCAGATGACT GCTTTGTTCT
  GGACAACGGG CTGTGTGGCA AAATCTACAT CTGGAAGGGT ATGTATGGCT CCTCTGTGTG
  AGCCTGAGGG CACCGCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133285619	ENSMUSSNP5223066	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46227666					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72535696 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57147	transcription start site region 57147	1370 bp downstream
Tssr57148	transcription start site region 57148	26 bp downstream
Tssr57149	transcription start site region 57149	53 bp upstream
Tssr61469	transcription start site region 61469	898 bp upstream