rs46229056 SNP Detail

Summary

• ID
  rs46229056
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116330161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAAGCGGGC GACCCATCCG CAGTGAGTTG CTCCTGGAGG
  CTCCTGTGGA GCTAAATCTC TGCTGCCCCT CAACTCTGAG GAGCCAAACA GCAGAATGGG
  R
  AAGACCAGAA CCAAAATGAA ATGAAACTTA CAGGCCCCAG CCAGGAGGCC AACACGCGCG
  CATGCGCGCA CACACACCCC TACCTCTCAG GTGGAGCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132886587	ENSMUSSNP6665596	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss323865675	CHEV_11_116300649	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46229056					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116330161 () rs orientation: forward

Symbol	Name	Function Class
Qrich2	glutamine rich 2	1990 bp downstream
Rr386723	regulatory region 386723	1532 bp downstream
Rr460288	regulatory region 460288	1666 bp distal
Rr460289	regulatory region 460289	within coordinates
Ubald2	UBA-like domain containing 2	258 bp downstream