rs46229981 SNP Detail

Summary

• ID
  rs46229981
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:13854399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAGTTTA TTGGAATTCT
  TTCCTGCGGT GTAGTATCAA TTTTTGAACA TTTCAGTCTC AGCTCAGTTA TCTCCTTTTT
  AAAGAGGCCT CCCTGATTGC CATGTCAGAT TACTTCCCTC TAGCCATACT CTTTATTTAC
  GCATATATGT ATATATTCAT ATATGTATAT ATTCATATAT TGTCATCTCT AATGTAAACT
  W
  CAGCTATTTA CAGTTGTCCA TATGTTGTAC ATACTAAGTG TACTGACAAA GCAATGAATA
  TTCAATGTGA ATAGCTTCCT TTAGAATCAC CAATAGCATA GAGGTGCTAG TTAATTTCTT
  TATGCAGGTA ACATGGTTTT TAGCTTTCTC TGTATGTGTC TGTGTATGTG AGTGAAAGGT
  AATAGCTTAC AAATATAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61750087	NES17677444	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46229981					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61750087	NES17677444	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:13854399 () rs orientation: forward

Symbol	Name	Function Class
Lyst	lysosomal trafficking regulator	within coordinates
Rr270837	regulatory region 270837	1802 bp proximal
Rr282634	regulatory region 282634	1799 bp distal