rs46230902 SNP Detail

Summary

• ID
  rs46230902
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:6571583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCCCTTA TCGCTTGGCA
  GCAACTTTAC TCCTTCATGA AAATGTTCAC TGCTCCTTTG CCCACCTAAT GCCTCTTGAC
  TGGCTACTCC CTGTCTCCCT TCTCCATCAG TGAAATTCTC ACTAAGTGCC TTTAATGTTC
  ATTTGGTTCT GCAATCTTGC ATATTTGTTG GCTGACTCCT ACTTGCAAAA GCCTAATCTA
  S
  TTAAAGGCAA AACTGTGCTT CTATGTTAAT ATGTAATGAC ACCATTTAAA AACAAAATGC
  TCCCATTCCA GATGGGAAGA GGGTATCCAT GTAAATCACT TTATGTGAAA TGATGATGGG
  AAACAGTAAG ACCAAACTTA GATCACTATA CTTCCTGTTT GATAAGACAA AATCCACCTC
  CGTCTTTAAC TGAATGCTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62615386	NES17311460	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46230902					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62615386	NES17311460	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:6571583 () rs orientation: forward

Symbol	Name	Function Class
Fyb1	FYN binding protein 1	within coordinates
Gm62041	predicted gene, 62041	499 bp downstream
Gm62055	predicted gene, 62055	1070 bp downstream
Tssr130496	transcription start site region 130496	1832 bp downstream
Tssr130497	transcription start site region 130497	1790 bp downstream
Tssr130498	transcription start site region 130498	1773 bp downstream
Tssr130499	transcription start site region 130499	1749 bp downstream