rs46231333 SNP Detail

Summary

• ID
  rs46231333
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:35502580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCA GGTCCTGTCA GAGCTGGTGT
  Y
  GGTCTAGAAC TCAGTTGATA TCCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	NOD/ShiLtJ	PWD/PhJ
ss60995113	NES16129112	PERLEGEN	MM_PANEL2	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	NOD/ShiLtJ	PWD/PhJ
rs46231333					SNP	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60995113	NES16129112	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35502580 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18877	CpG island 18877	within coordinates
E130304I02Rik	RIKEN cDNA E130304I02 gene	within coordinates
Rr645475	regulatory region 645475	553 bp distal
Rr645476	regulatory region 645476	177 bp distal
Rr645477	regulatory region 645477	within coordinates
Tssr72060	transcription start site region 72060	148 bp upstream
Zfp507	zinc finger protein 507	mRNA-UTR