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rs46231333 SNP Detail
Summary
  • ID
    rs46231333
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:35502580 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          ATCCA GGTCCTGTCA GAGCTGGTGT
    Y
    GGTCTAGAAC TCAGTTGATA TCCAC                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
AKR/J
NOD/ShiLtJ
PWD/PhJ
ss60995113 NES16129112 PERLEGEN MM_PANEL2 f SNP T T C
SNP Consensus Information
SNP Consensus Type
AKR/J
NOD/ShiLtJ
PWD/PhJ
rs46231333 SNP T T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60995113 NES16129112 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:35502580 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi18877 CpG island 18877 within coordinates
E130304I02Rik RIKEN cDNA E130304I02 gene within coordinates
Rr645475 regulatory region 645475 553 bp distal
Rr645476 regulatory region 645476 177 bp distal
Rr645477 regulatory region 645477 within coordinates
Tssr72060 transcription start site region 72060 148 bp upstream
Zfp507 zinc finger protein 507 152 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory