ATCCA GGTCCTGTCA GAGCTGGTGT Y GGTCTAGAAC TCAGTTGATA TCCAC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | AKR/J |
NOD/ShiLtJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|
ss60995113 | NES16129112 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | C |
SNP Consensus Information | ||||||||
SNP | Consensus Type | AKR/J |
NOD/ShiLtJ |
PWD/PhJ |
||||
rs46231333 | SNP | T | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss60995113 | NES16129112 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr7:35502580 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi18877 | CpG island 18877 | within coordinates | ||||||
E130304I02Rik | RIKEN cDNA E130304I02 gene | within coordinates | ||||||
Rr645475 | regulatory region 645475 | 553 bp distal | ||||||
Rr645476 | regulatory region 645476 | 177 bp distal | ||||||
Rr645477 | regulatory region 645477 | within coordinates | ||||||
Tssr72060 | transcription start site region 72060 | 148 bp upstream | ||||||
Zfp507 | zinc finger protein 507 | 152 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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