rs46231662 SNP Detail

Summary

• ID
  rs46231662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54815663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGTTGGTC CGGAGACTTG AGAGACAAAC AGATAAGCTG
  CAATAAAAAA AGCACTTTCT AGCCCCATGA TTCTCTGATG GTGGAGTGGG AGGATACGAG
  R
  TTTATGTGCT TATATGAAAA GAAGCGAGGA AAATAACAGG CTGATCCCTG TCGCTAGAGG
  GACAAGAGGA AGATTTAGTG TGTACATAAA AACACGGAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss139565768	ENSMUSSNP6984315	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46231662					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54815663 () rs orientation: forward

Symbol	Name	Function Class
Ajuba	ajuba LIM protein	648 bp upstream
Cpgi6463	CpG island 6463	460 bp distal
Gm63340	predicted gene, 63340	within coordinates
Rr389677	regulatory region 389677	124 bp downstream
Rr404101	regulatory region 404101	within coordinates
Rr492273	regulatory region 492273	546 bp distal
Rr492274	regulatory region 492274	within coordinates
Rr492275	regulatory region 492275	151 bp proximal
Tssr128602	transcription start site region 128602	708 bp upstream
Tssr128603	transcription start site region 128603	667 bp upstream
Tssr128604	transcription start site region 128604	648 bp upstream
Tssr128605	transcription start site region 128605	629 bp upstream
Tssr128606	transcription start site region 128606	594 bp upstream