rs46233056 SNP Detail

Summary

• ID
  rs46233056
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21633423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGTGCTG AGACCACAGA
  TTGTGACAAC AGGCTTGGTT TACGTGATGC TGGGGACGAA GCCAGGTACC CTACCAACCC
  AATGCAGTGT GTCCCGTTCT CTCTCCTGTC TCACGGTTCA GCTTCTGGTA GTTTGTTTTG
  CATTATGTAT TATTTACTTT TTTATTACTG CCTGTGACAC ATCACAATAT GAATGTGCAG
  R
  TCACAGGGAC GAGTTCTCTC CTCTCATGTG GGTCCTCGGA TTTGAACTCA CATCAGGTCA
  GTCCTGGCTG CATGCACTAA GCCAACACAC TAGCCCTGGT TTGTTCTGCA GGGAGCTAGG
  CAGGGACAGA ATCTGAGTCC CTTTTAGAAA ATCCCTAAGC CTTTGATTCA TCAAAACTTC
  TCTATCCATG GCAGACAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss61360194	NES16736577	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs46233056					SNP	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61360194	NES16736577	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21633423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21450	CpG island 21450	1012 bp proximal
Gm26511	predicted gene, 26511	within coordinates
Ldlr	low density lipoprotein receptor	1449 bp upstream
Rr206061	regulatory region 206061	577 bp proximal
Rr401274	regulatory region 401274	1248 bp upstream
Tssr84044	transcription start site region 84044	1477 bp upstream
Tssr84045	transcription start site region 84045	1497 bp upstream