rs46233458 SNP Detail

Summary

• ID
  rs46233458
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141263168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCTTTGAA GCATTTTATG
  TAATGTATTC CCAGTGTACA CCTCTTAATC CTGTAGAACA GTTATTAGTT AATGTTGTAA
  TCAGCTAGGG AAAAGGGTAG GAAAAGGCAC TCTGGTTCGG TTTAACATAG GCATCTCGGA
  GTTCTTCTGT TTCTGAGGTC TACAGGGCAG AGTCTGAACG CCATTAAGTT TCCTTGTCAT
  T
  TTAGTGCCTT TCCATCCCTT TCGTTTAAAT GATTCAAATT CTCTTTTTCC TTCCTGGCGG
  CGATCACAAC AAAACACATT CCACTATATG GAGAAAGAGA TCTATACTTA GCTCCACAAC
  TGAACCGGCA AGAACATTTT TGTAGGCATA AAGATAAGCA ACAAACCAGA AACAGTGAGT
  ACCTGTTTGG GGGGGGGGGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321387937	CHEV_4_141091772	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46233458					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141263168 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15233	CpG island 15233	308 bp proximal
Cpgi15234	CpG island 15234	1562 bp proximal
Gm4123	predicted gene 4123	within coordinates
Rr1207	regulatory region 1207	904 bp proximal
Rr603787	regulatory region 603787	442 bp distal
Rr603788	regulatory region 603788	927 bp proximal
Spen	spen family transcription repressor	within coordinates