rs46233652 SNP Detail

Summary

• ID
  rs46233652
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:81440244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGTGAGA AAGTGGCTAA
  AGCCTAAGAC TCAGGTGATT CAGGTGTTAA ACCACACCAC ACCTTTTTTG AAATACATTA
  CAAATAGAGG CACAAAGTGG AGCCAAAACT ATACTGTAGT AATTTGATGA ATTTTGAGGT
  GAAATCATGA TGCCCTAAAA ATATTTACAT TACGATTCAT AACAGTAGCC AAATTAGTTA
  K
  GAAGTAGCAA CAAAAGTAAT GTTACCGTTG GGAGTCATCA CAGCATGAGG AACTGTATTA
  AAAGGTTGCA GCATTAGGAA GGTTGAGAAC CACTGCTCTA GAGACTTGAC AGTTTTTATC
  AGGGGAGGAA CACGGATTGG TGTATTTCTG ATGGTGCCTG GATGGGCAAA GGAGGGGGAA
  GCAATGTCCT CTAAGGAACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145164788	ENSMUSSNP3892525	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46233652					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:81440244 () rs orientation: forward

Symbol	Name	Function Class
3110040N11Rik	RIKEN cDNA 3110040N11 gene	1018 bp upstream
Btbd1	BTB domain containing 1	1578 bp downstream
Cpgi19360	CpG island 19360	751 bp distal
Gm45016	predicted gene 45016	within coordinates
Gm45845	predicted gene 45845	177 bp upstream
Rr168121	regulatory region 168121	243 bp distal
Rr400414	regulatory region 400414	867 bp downstream
Tssr73353	transcription start site region 73353	1006 bp upstream