rs46235769 SNP Detail

Summary

• ID
  rs46235769
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80818651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATGTGTTA TATTATTACC TAAAAACACA TAATCTTTAG
  AAGTCATTAC TTAGTGTTTA TCTGTTGTAA TGGTTGGATA TTTCCAGCTT TTATTGACCA
  K
  TAATATTAAC CCTTCTCAGA AAAGAACCCA GGCTGATAAA CTTTGACTTT TGGGAGACTG
  TAGCTGGATG GTTTTTTCCT TTTTTTTTTT TTTTTAAAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135386120	ENSMUSSNP3972409	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
ss320812957	CHEV_3_80715266	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46235769					SNP	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80818651 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13282	CpG island 13282	1726 bp proximal
Glrb	glycine receptor, beta subunit	within coordinates
Gm54207	predicted gene, 54207	1194 bp upstream
Gm65109	predicted gene, 65109	1877 bp upstream
Rr578673	regulatory region 578673	1463 bp proximal
Rr578674	regulatory region 578674	1888 bp proximal