rs46236328 SNP Detail

Summary

• ID
  rs46236328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120597397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGCAATG CCTGGTATTT
  GCTTAGAGCA GGCAGGCAGC TTCAAAGAAT TCAAAGGCCC ACAAAAGGCA GCCTTGGACT
  CTTAGAAGAT CGTTTGGTCC TAGAAGGTGG CAGGCAGCCT TGCCTTTGGG AGTTGAACAC
  CATTGCTGGG CTGTGCCATT GCTGCTGAAG AGGGCAGAAG CTCTTACTGT CCCAGGTGAC
  Y
  GAGCAATAGG GGCTCCACAA TTGGAGAGGG AGATGCAAGA GAGAAGCTCA TGCTTAGGTT
  CATATTAAGG TACAGCCTCC TCTGAAAACT GATTAACCTT GATGTTAGCA ATCCCCTGCC
  CTCAACTCTC CTCCATCTGG GGCTGGGGAC ACAACCCACA GCTGGCCTTG CCTCTCATGG
  TGTTCTGGGT TCTCCCTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss132909399	ENSMUSSNP1508926	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs46236328					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120597397 () rs orientation: forward

Symbol	Name	Function Class
Aspscr1	ASPSCR1 tether for SLC2A4, UBX domain containing	within coordinates
Gm17178	predicted gene 17178	within coordinates
Rr246346	regulatory region 246346	796 bp distal
Rr246347	regulatory region 246347	203 bp proximal
Tssr106340	transcription start site region 106340	1501 bp upstream
Tssr106341	transcription start site region 106341	1530 bp upstream