rs46236738 SNP Detail

Summary

• ID
  rs46236738
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51371322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCTGTACT CATTCATCCT GTTATCCACA GACAATTCCT
  TTTGTATAAG TTTGAGGATG ATTTTATTAG GGTTTAAAGA AAAATGTAGC ACAGGCAATC
  M
  GTTAATCTTA GCAGCTGCCA GGTGGAGAAA GAGAAAAGGA AGAAACAAAA TTAGGGGGAA
  ATCACATTGT TTGAGTAGAG CTAGAATGAA GAGAAACTAT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52288590	NES15304595	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	A	A	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46236738					SNP	C	C	C	C	C	C	A	C	C	A	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52288590	NES15304595	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51371322 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	within coordinates
Tssr93274	transcription start site region 93274	1508 bp downstream
Tssr93275	transcription start site region 93275	1375 bp downstream
Tssr93276	transcription start site region 93276	1321 bp downstream
Tssr93277	transcription start site region 93277	1273 bp downstream
Tssr93278	transcription start site region 93278	1237 bp downstream
Tssr93279	transcription start site region 93279	1081 bp downstream
Tssr93280	transcription start site region 93280	634 bp downstream
Tssr93281	transcription start site region 93281	586 bp downstream
Tssr93282	transcription start site region 93282	568 bp downstream
Tssr93283	transcription start site region 93283	478 bp downstream
Tssr93284	transcription start site region 93284	110 bp downstream
Tssr93285	transcription start site region 93285	55 bp upstream
Tssr93286	transcription start site region 93286	169 bp upstream
Tssr93287	transcription start site region 93287	531 bp upstream
Tssr93288	transcription start site region 93288	791 bp upstream
Tssr93289	transcription start site region 93289	859 bp upstream
Tssr97556	transcription start site region 97556	715 bp upstream
Tssr97557	transcription start site region 97557	378 bp upstream
Tssr97558	transcription start site region 97558	795 bp downstream
Tssr97559	transcription start site region 97559	1265 bp downstream
Tssr97560	transcription start site region 97560	1361 bp downstream