rs46237216 SNP Detail

Summary

• ID
  rs46237216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62020626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCTCTCTC TTCCCATTTG TGTTGCCCTT AACTACAGAG
  CATTCTTGCC AGTCCAGGTA TGTTTTTTGC ATAGATATGC AAATGTTCAT TGCAATAACA
  R
  AATAAAGTTG TCACTGAATA CAGCAACGCA TATCTTTGAT CTCATGGACA TCTTTGAAGT
  TTGAGGCCAG TCAAGGCTAC AAGTCTCTCT TGTCTGTCTG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61279731	NES16893321	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46237216					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61279731	NES16893321	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62020626 () rs orientation: forward

Symbol	Name	Function Class
Rr215628	regulatory region 215628	1026 bp distal
Rr215629	regulatory region 215629	1775 bp proximal
Rr228219	regulatory region 228219	972 bp distal
Rr228220	regulatory region 228220	1497 bp proximal
Rr401940	regulatory region 401940	1405 bp downstream
Tspan15	tetraspanin 15	549 bp downstream