rs46237368 SNP Detail

Summary

• ID
  rs46237368
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:20511700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGCCTGTA ATTATTAAAC ATGAATTCAA TTAAGTTTAT
  TGCCTCTTTA CTGACCTATG GATCATCTTT CTTACCAGAT CTGGCCACTG TATCATTGAT
  R
  CTTGCTTGTT TACCTGTCAG AAAATTTTGG GGACCTGGGG AATTGCTTTT CTGGAGGGTT
  GAGATCTTTG GATCAGCTTG ACACAGTGAT GAGTGCTGTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss52599451	NES15692403	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs46237368					SNP	A	A	A	A	A	G	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52599451	NES15692403	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:20511700 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8083	CpG island 8083	150 bp proximal
Eif4g1	eukaryotic translation initiation factor 4, gamma 1	67 bp downstream
Fam131a	family with sequence similarity 131, member A	291 bp upstream
Tssr137486	transcription start site region 137486	1140 bp downstream
Tssr137487	transcription start site region 137487	313 bp upstream
Tssr137488	transcription start site region 137488	377 bp upstream