rs46237872 SNP Detail

Summary

• ID
  rs46237872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86347950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAC CTGCTTCCCC ATAGAACCGA
  R
  GATCACCGAC CCAGGCAGGG ATAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136756078	ENSMUSSNP2055679	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323056341	CHEV_9_86359504	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46237872					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86347950 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22101	CpG island 22101	780 bp distal
Cpgi22102	CpG island 22102	1020 bp proximal
Dop1a	DOP1 leucine zipper like protein A	1244 bp upstream
Rr684095	regulatory region 684095	958 bp distal
Rr684096	regulatory region 684096	457 bp distal
Rr684097	regulatory region 684097	918 bp distal
Rr684098	regulatory region 684098	767 bp proximal
Rr684099	regulatory region 684099	1184 bp proximal
Rr684100	regulatory region 684100	1268 bp proximal
Tssr86391	transcription start site region 86391	1266 bp upstream
Tssr86392	transcription start site region 86392	1276 bp upstream
Tssr86393	transcription start site region 86393	1327 bp upstream
Tssr90780	transcription start site region 90780	954 bp upstream
Tssr90781	transcription start site region 90781	939 bp upstream
Ube3d	ubiquitin protein ligase E3D	947 bp upstream