rs46238088 SNP Detail

Summary

• ID
  rs46238088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:36532166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATACAAC TTGAACTCAA
  GTGAACTTTG CTCACATGAC CTTGCTTAAC ACTCAGAGTG CCTTTAGAAT ATAAGTTGTT
  TGAGGCTCTG AATAAAAATG GCTACTGCAT TAGACTTTAG TCTGTCTAAG TTTTACACTC
  TACCTTCCAA GTTCACAGGG TCACTTAGAG TGGTGCCAGT CTTGGATACA AACGCTCTCT
  Y
  AGTGGGCACC CTGGCAGGTT CTACCTTCCA CCGGTGCAGC CTTCATTCCT TCCATTCAGT
  GCTGTGCCTT TAGTTGACCT TGAGAACAAC GGTCTTGCCT TCTAGTATTT GTTCTAGACC
  TGCTGACAGC ATCACACACA TTCCGGGAAA ATGGATGATA ACTAACTGGT AAATTTGTAG
  ACATACCCAG CAATAGAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61597401	NES17553386	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46238088					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61597401	NES17553386	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36532166 () rs orientation: forward

Symbol	Name	Function Class
Crppa	CDP-L-ribitol pyrophosphorylase A	Intron
Rr387069	regulatory region 387069	within coordinates
Rr465183	regulatory region 465183	1258 bp proximal