rs46238220 SNP Detail

Summary

• ID
  rs46238220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:17730826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACCCCCC ACCCTCTCCC
  CATGCTTTAG GTCAGTTCTC TGAGGAGCAG ATCTGGAGTG AAATTCATAG ACCAGAAGAC
  TTACTAGAGA GATACCAATG TATTAGGGGG GCATAGGCTG GGAGCCCTAT GACAGAGGGT
  CTGCCCACCC CCAGGGGGCT CTGATGTTGG AGTGACCTTC TTTGTTGCTC TAGGCAGGAA
  Y
  CTGGACCTTA GTATCTCCAG ATAGACCTGT CTTCAGGATA TAGGCTATCC TGGATGCAGG
  TGGACCTTAG GCTAAGTAGC CTTTTCCACT AGAAGACAAG GAAGAACCAA GAACCATATG
  TCCCCAAAGC TCAGACCAGC TGAGAAAGTG AGGTTACGGC TATGGTGGGC ACCCAGGGGG
  TTCATCATAG CAGCTGTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52307848	NES15361195	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	T		T	T	T	T		T
ss323926904	CHEV_12_17687631	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46238220					SNP	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52307848	NES15361195	PERLEGEN	MM_PANEL	f	SNP	C/T