rs46240042 SNP Detail

Summary

• ID
  rs46240042
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:11797666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAT CTGGACAGAA GTGAGGAAGG
  R
  GGATGGATTC ATTTTGAAGC AAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146053666	ENSMUSSNP647026	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46240042					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11797666 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10634	CpG island 10634			906 bp distal
Cpgi10635	CpG island 10635			158 bp distal
Gm41810	predicted gene, 41810			within coordinates
Gm59062	predicted gene, 59062			within coordinates
Rr544383	regulatory region 544383			1592 bp distal
Rr544384	regulatory region 544384			870 bp distal
Rr544385	regulatory region 544385			244 bp distal
Rr544386	regulatory region 544386			131 bp proximal
Rr544387	regulatory region 544387			153 bp proximal
Stx3	syntaxin 3			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr155285	transcription start site region 155285			1726 bp downstream
Tssr155286	transcription start site region 155286			1260 bp downstream
Tssr155287	transcription start site region 155287			1179 bp upstream
Tssr155288	transcription start site region 155288			1520 bp upstream
Tssr158398	transcription start site region 158398			1860 bp upstream
Tssr158399	transcription start site region 158399			1419 bp upstream
Tssr158400	transcription start site region 158400			1337 bp upstream