rs46240059 SNP Detail

Summary

• ID
  rs46240059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:43129995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTTTAAA GAGCAAGCTC
  CAGGCCTTTT ACAGTTCTAC AGCTAGAAGA AGCTGCCAGT GGAGCACAGT ACCAACCTTT
  GTCTCTAGAC AGTTTAGGCC AAAGCTGAAT TGGCCGTGCA GGCTGCAAAA GCTCTGTCCC
  CAACTTTAGG GCCAGAAGAC TTCAACTCAG ATATGACAGG AGGAAGGAGA GCAGAGAAAA
  Y
  AAGGCCAGGA GTTGTGCCGA GTCTTACCGA TGAGCTGAAC ATGCACACCT TGCCATGCAC
  AGTGAACTGA AATCCAGAAT CCACAGCCTA ACTCCACAGT AAGACCTCCA TGGGGTCAAC
  GGTGGCTCAG GTCACTGAAC TATGAATTTT CAGAGTCGAA GAGTGGCCTT AACACTCTCA
  TTTTTATTAG TGAACAATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss149008198	ENSMUSSNP1852483	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46240059					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:43129995 () rs orientation: forward

Symbol	Name	Function Class
8430432A02Rik	RIKEN cDNA 8430432A02 gene	1753 bp upstream
Cpgi213	CpG island 213	821 bp proximal
Rr410291	regulatory region 410291	1263 bp proximal
Rr410292	regulatory region 410292	1764 bp proximal
Rr410293	regulatory region 410293	1884 bp proximal
Tgfbrap1	transforming growth factor, beta receptor associated protein 1	within coordinates
Tssr11467	transcription start site region 11467	1603 bp downstream