rs46240872 SNP Detail

Summary

• ID
  rs46240872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:31058042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTG TAAGTCTTGG TCTTAGTACA
  Y
  AGCCTCTGGA GACAAGGGGA AGCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss60590094	NES16330939	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T		C	C		T
ss148943904	ENSMUSSNP6613559	ENSEMBL	ENSEMBL_Sanger	f	SNP		T			T
ss322545327	CHEV_8_31678486	CHEVERUD	SCREENING_POP	f	SNP							T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs46240872					SNP	T	T	T	C	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60590094	NES16330939	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:31058042 () rs orientation: forward

Symbol	Name	Function Class
4933433F19Rik	RIKEN cDNA 4933433F19 gene	381 bp upstream
Gm63720	predicted gene, 63720	within coordinates