rs46241829 SNP Detail

Summary

• ID
  rs46241829
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:82409710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGACTCA CTCTGTATTA
  AATTATGAAA CAAAGTTTCT TTTAAACCTC CAATTTTTCT AGTTAGTGTC TTTCCTCTTA
  CCATCTATTA AGTGTCTTTC ATCCTAGATC TACTACCCTA TTATCTTCAC TTGATTATGT
  CACTTTGAAA CCTGTGTAAT ATCAATCATC TTAAATTTAT TGTGAATTTG AGTGAATAAG
  Y
  TGCTTCTTTT TTGAATATTT GTATTTTGAC ATTTCATTGT AGAATAAAAG GCCATATATC
  TAATTATTAT AATGAATTCA GACATCAAAT ACTAGGTATA AAATGTTTCA TTTATGGGAA
  GGAATAGATT CTGTTCTCTT AAAATCACAC AAATTGCAAA ATTATCTAGT ATATTTGCTG
  CATGTCTTAA GACTCTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61858008	NES17782215	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46241829					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61858008	NES17782215	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:82409710 () rs orientation: forward

Symbol	Name	Function Class
Gm59879	predicted gene, 59879	within coordinates
Rr277316	regulatory region 277316	1910 bp distal