rs46241899 SNP Detail

Summary

• ID
  rs46241899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81031849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGGTGGAT AAAGTGTTTG
  TCTCGAGTGC GTGGGGACCT TGGTCAGAAT CCCTAGGACT CAACTCAACT GAGGCACAGC
  AGTGTCTGTA TGGAGTCTGG AAATCCAGCC AGGCAGGGGA CCTTATGCTC TGCTAGGTCC
  CACAGGCCAA GTTCTTCAGG ATCTGGGGAC AATAGAGCTG AGGGGTCAGC CACGAGGCCC
  Y
  ACTGCTGGCT CTGGGGCTTG TGAGTGTCCC TATCAGCACG GTAACCCATA CGGGAGACAG
  AGGAACCTTG AGCTCATTTT GTGGGGATGT CTGGCTGGGT GTTCTGTGTG GGGCATTCTG
  GAAGGTGCTG AGTAGTGTCC CACTCTGTGT CTGGAGCTCC CCCAATGTGA CACTTGTCCC
  CAGCCCCCAC CGAGAACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52388370	NES15266917	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46241899					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388370	NES15266917	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81031849 () rs orientation: forward

Symbol	Name	Function Class
Atcayos	ataxia, cerebellar, Cayman type, opposite strand	within coordinates
Cpgi1954	CpG island 1954	1309 bp distal
Rr435553	regulatory region 435553	1312 bp distal
Tssr94716	transcription start site region 94716	1408 bp downstream
Tssr94717	transcription start site region 94717	1315 bp downstream
Tssr94718	transcription start site region 94718	932 bp downstream