rs46242120 SNP Detail

Summary

• ID
  rs46242120
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103366463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGGCAGG GGGAAGGAAG
  CCCCTGATCC AGTGAGCTCT GCAGAGGAGC AGGCCTCAGG CTGAGCTGCT ACGTTGTTGC
  TGTTTCTGTG CAGGGCGGTT GTGGGGGGTG GGGGTTGGCA GTTACCTCTG AGGTCTCTAG
  GGACTGGATC TCCCTCGGGA GCTCCACCGC GTGTCTGTTG AAGTAGTCCA TTGTGATGGC
  R
  TTGTTCCAGT AGCTCAGGTT GTTCTCAGGG TTGGCCGTCT TCTTCTTCCT CCTCATGCAG
  CACACTGTCA ACAGGACCGC TGTGGAGAGA GGCCCAGTCA GAGAGAGGCA GAGGGAGGAG
  ACAAATGACT TAGTGTCAGA GGGGTGCAGA GGACATCCTG CCCCCAGACA TCCTGCCCCC
  CAGCCTCCAT GTTCATTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61447819	NES16830636	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46242120					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61447819	NES16830636	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103366463 () rs orientation: forward

Symbol	Name	Function Class
Gm16252	predicted gene 16252	within coordinates
Rr192235	regulatory region 192235	938 bp proximal
Rr207116	regulatory region 207116	within coordinates
Tmem108	transmembrane protein 108	within coordinates
Tssr91216	transcription start site region 91216	37 bp downstream
Tssr91217	transcription start site region 91217	57 bp downstream
Tssr91218	transcription start site region 91218	85 bp downstream