rs46243411 SNP Detail

Summary

• ID
  rs46243411
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72156592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGCAAGAT AGGAAACCAG GTGGGCAAGC TCCAAACTCT
  GCATCTCCAT GTCTGATGTC AAAGCAGTCT TCAGATTTCC AACTCCTATT CATTTTTTTT
  W
  AAGAGTCATA GACATTTTAC TGGTTTGTTT CAGACATCCT GGAGATTTAA AAAAGTGTCC
  ATGGAGCCAT GGATGCTGGT GGCAGGAGGC AGCAGAGGGG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60630719	NES16282488	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs46243411					SNP	A	A	T	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60630719	NES16282488	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72156592 () rs orientation: forward

Symbol	Name	Function Class
Gm18860	predicted gene, 18860	257 bp downstream
Rr665158	regulatory region 665158	1669 bp distal
Rr665159	regulatory region 665159	1956 bp distal
Rr665160	regulatory region 665160	1738 bp distal
Rr665161	regulatory region 665161	648 bp distal
Rr665162	regulatory region 665162	222 bp distal
Tssr81752	transcription start site region 81752	1314 bp upstream