rs46243450 SNP Detail

Summary

• ID
  rs46243450
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98178910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGTTGC TGCAGACAAT
  GAGGCCCGCA GCGACAGCTC TCGGGACAAG TTCCTCGCCT CCCGCTGAGT CTCCGGCGCC
  CACCCGGGAG CAGAAAGGCT GGCGTCTAGC TGCGGTGGTG AGCTGCGGGA CAGGCACCCG
  CGGACCCCAC GATCGCCGCG GGAACTCAGC CGAGTCCTCC TCTTCCGCCT CTCTTCCTCG
  K
  ACCGCCCAAC TCCTCGCGGC ACTTTATAAC TTTCTTCCCT GCCCCAACCT GGCGCCGCGC
  CGCGCGGGGC GAGCCTCTGC AGCCCGGGAT GCTAAGCACC CGGGGGAGCG GCAGGCCGCC
  GGGCACCTCA GGCCTGGGGG GTGGGAGTGG GCGCTGACCG GTCTGCTCGT GCGAGCCCGA
  GGGCGGGGCG CCGGGAGGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61199540	NES16709304	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs46243450					SNP	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61199540	NES16709304	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98178910 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	34 bp upstream
Cpgi16083	CpG island 16083	within coordinates
Gm42759	predicted gene 42759	within coordinates
Rr615103	regulatory region 615103	within coordinates
Rr615104	regulatory region 615104	1876 bp proximal
Tssr1554	transcription start site region 1554	89 bp upstream
Tssr47433	transcription start site region 47433	327 bp downstream
Tssr47434	transcription start site region 47434	315 bp downstream
Tssr47435	transcription start site region 47435	44 bp upstream
Tssr47436	transcription start site region 47436	213 bp upstream
Tssr47437	transcription start site region 47437	248 bp upstream
Tssr51988	transcription start site region 51988	435 bp upstream
Tssr51989	transcription start site region 51989	424 bp upstream
Tssr51990	transcription start site region 51990	404 bp upstream
Tssr51991	transcription start site region 51991	286 bp upstream
Tssr51992	transcription start site region 51992	231 bp upstream
Tssr51993	transcription start site region 51993	59 bp upstream
Tssr51994	transcription start site region 51994	13 bp upstream
Tssr51995	transcription start site region 51995	86 bp downstream
Tssr51996	transcription start site region 51996	246 bp downstream
Tssr51997	transcription start site region 51997	284 bp downstream
Tssr51998	transcription start site region 51998	324 bp downstream
Tssr51999	transcription start site region 51999	359 bp downstream
Tssr52000	transcription start site region 52000	380 bp downstream
Tssr52001	transcription start site region 52001	400 bp downstream
Tssr52002	transcription start site region 52002	420 bp downstream
Tssr52003	transcription start site region 52003	462 bp downstream