rs46243687 SNP Detail

Summary

• ID
  rs46243687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37742268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAAGTCCA CAACAGGAGT TGCCCTAAAT CACTGAAACT
  AAATCTACTC CAGAAGGTCA CTATTCCCTA CTTGAACCTC TCAGTGCTTT TTGTGCTCTG
  R
  CCCCCACCTG AAGACCAAAG CAGACCTGGG GAACTTTACA CAAGCTCCAC AGCGGTCATA
  GAGGGCATAG CACCAACTTT GTGAAGGGTC GCTGGTGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134811119	ENSMUSSNP3000806	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320711771	CHEV_3_37587041	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46243687					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37742268 () rs orientation: forward

Symbol	Name	Function Class
Gm65174	predicted gene, 65174	377 bp upstream
Rr575540	regulatory region 575540	868 bp distal
Rr575541	regulatory region 575541	948 bp distal
Rr575542	regulatory region 575542	388 bp distal
Rr575543	regulatory region 575543	195 bp distal