rs46244977 SNP Detail

Summary

• ID
  rs46244977
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172185687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAA GTGCTGGGAT TAAAGGCATG
  T
  GCCACCACGC CCGGCTTAGG ACTAT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148313919	ENSMUSSNP1517995	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320618191	CHEV_2_172169267	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46244977					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172185687 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12819	CpG island 12819	1548 bp proximal
Fam210b	family with sequence similarity 210, member B	1798 bp upstream
Rr48055	regulatory region 48055	1687 bp distal
Rr56171	regulatory region 56171	1113 bp proximal
Tssr21944	transcription start site region 21944	1812 bp upstream
Tssr21945	transcription start site region 21945	1828 bp upstream
Tssr21946	transcription start site region 21946	1861 bp upstream
Tssr27939	transcription start site region 27939	1903 bp downstream