rs46245160 SNP Detail

Summary

• ID
  rs46245160
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8649478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGTCTT GCCAGGGTAG
  GCGGGGAGGG AGGAAGGGCA GGCCACGTTC CGGTTGACAG CCGATGTTCT GAGTGTGTTT
  TCTCCTCTCA AGTTCAGCTT CTGCTAACCT TGAATGCCTT GCAACTTGAG AATATCTGTG
  GTGTTCTAGC TAGATATCCA GAGGCAATTT TTGACACGCC TCCTATTCCT CCCTCGGGGA
  A
  GTATGACAGT GCCTACGGGA CACTTGGTTG TCAATCTTGA GAGGGGGCTG CTGGTTACTC
  TACAGTGCCT GAGACATCAA TCCCCTAGCT CCTACCCTTT AGCAAGGATT TAACGCAGTC
  TGCAAAGGGC TGAGATTAAA GCTCTGCTGT GGAAGACAAG ACAGGTGAGC CTTGTCTGGA
  AAATGATTCA ATAGAAGCAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147831450	ENSMUSSNP364958	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46245160					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8649478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7943	CpG island 7943	106 bp distal
Hapstr1	HUWE1 associated protein modifying stress responses	within coordinates
Rr325518	regulatory region 325518	within coordinates
Rr370042	regulatory region 370042	1575 bp downstream
Tssr137006	transcription start site region 137006	1593 bp downstream
Tssr137007	transcription start site region 137007	1556 bp downstream
Tssr137008	transcription start site region 137008	1510 bp downstream
Tssr137009	transcription start site region 137009	1472 bp downstream
Tssr137010	transcription start site region 137010	504 bp downstream