rs46245598 SNP Detail

Summary

• ID
  rs46245598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89313010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTG TTCCCACCTC TCCCCAGGCT
  R
  CCTTGCACTT AGGGTACAGC CCCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133371758	ENSMUSSNP4457017	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321851924	CHEV_6_89286022	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46245598					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89313010 () rs orientation: forward

Symbol	Name	Function Class
Plxna1	plexin A1	within coordinates
Rr141614	regulatory region 141614	1191 bp proximal
Rr150842	regulatory region 150842	within coordinates