rs46245973 SNP Detail

Summary

• ID
  rs46245973
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105792477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTC CTAATACAAT CAGATTCCTC
  G
  AGACAGCTGT CACTTTTGTT TGTGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132765609	ENSMUSSNP386028	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss323838665	CHEV_11_105762965	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46245973					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105792477 () rs orientation: forward

Symbol	Name	Function Class
Gm53650	predicted gene, 53650	within coordinates
Rr231188	regulatory region 231188	77 bp distal
Rr238670	regulatory region 238670	within coordinates
Rr238671	regulatory region 238671	324 bp proximal
Rr386628	regulatory region 386628	1025 bp downstream
Tanc2	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	within coordinates
Tssr105455	transcription start site region 105455	245 bp upstream
Tssr105456	transcription start site region 105456	321 bp upstream