rs46249009 SNP Detail

Summary

• ID
  rs46249009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:57489723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGACAAGC CACTGTCTGG
  TTTGGACTTG ACTAAGGCAT CAATTGAAAG TTGGCATAAA CACAAACCTC TTGTTTCATT
  GCTTCTCCCA AACAAACAAG GTTGGGTAAG AGTGCCTTCT TCATCCAGCA CCCTGCAGCC
  TGGTTCTTGT CTTCCTCTCC AGGGAGGCCC ATGAAGCAAA CATTCATAAA GGTGGCTAGT
  Y
  CTGGCAGGCA TGGCCTTGGC CATTTACAAA GCACATCTAG GCTGGTTATA TGGATGCTAC
  AGCCCCACAC AACAGGACCG AATGGGGAGT CCAGAAGGGA GAAAGGGGAA AACATTAGGA
  AGCTTCAAGG GATCGCATAG ATCATCCTTA ACCTTGGGCA AACTCAAGAT AAAGAGGCTT
  AGTCCCCTTC CCACTGTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62409669	NES17244596	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46249009					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62409669	NES17244596	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:57489723 () rs orientation: forward

Symbol	Name	Function Class
Tssr128959	transcription start site region 128959	227 bp upstream