rs46249099 SNP Detail

Summary

• ID
  rs46249099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:74317864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCACCCTA TCAGGAATGG
  GAAGCTGTTG GACACATCTA TGGAAAGCCC CAGTTTAGCA TCTCTCAGCT ACAAAACAGA
  TCAGATACTT CGTGTGGCTG AGCGGGCAGT GGGCGGCTCA AACAGCTCCC ACCACGGCTG
  AGGAGGCTGA GGTGCTACAG ACCTCAGAGT GCATCCTCCT CCTCAGTCAG AAGGAAGGGC
  R
  CCAAGGAGGT TCTCCGTAGG TCAGGGGAGG GACAGTACAA GGCAGAGCTC TAGAGGTCCC
  GCAACACATT TTTTATTTTA ATTTTAGATC ATTTAAAATT GCATATCAAA GCAGAATTCC
  CAGACATTGG CTGTTTACAA GAGGAATCTC AACTGTTAAG TTTAGAGTCA TCTTAAAGCA
  GATATAACGG GTAAACTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52661990	NES15473360	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	A	A	G	G	G		G	G	A		G
ss324434883	CHEV_13_74307193	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46249099					SNP	G	G	A	G	G	A	A	G	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52661990	NES15473360	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:74317864 () rs orientation: forward

Symbol	Name	Function Class
Exoc3	exocyst complex component 3	within coordinates
Rr284943	regulatory region 284943	864 bp distal
Slc9a3	solute carrier family 9 (sodium/hydrogen exchanger), member 3	303 bp downstream