rs46249795 SNP Detail

Summary

• ID
  rs46249795
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87193956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGACACAC CGGAAAGCTT
  TCCCCAGCCA CCCCCTACTC CCCTCGAAAT ACAACTGAGT TTCTCTACCG CCAAGGACCT
  GTCGTGCCTC CGATGAATCC CGCCCACTTC GCGCCCTCAA GCCAATCAGA GGGTGGCGTC
  ACTCCCTCTC AGTTGCCATG GTGCCCGCCA AGTCCTTTCC GCCACTTACC AGATGTGAGC
  M
  GGCTGGTCCA GCCGGTGAAA GCGGGTGGCA AAGGACAGCA GCGTCACCAC AGCCAACGTG
  GCCCACCACC CTGCCGCCTG GAAGCGCCGC GAGCTCCAAG CAGGCCGTTT AAGTTTCCGT
  GCTGCAGCCT GGGGGACCAC GTCTCGGCTC ACGGCTCTGG CAGCCTGCGG CACACAGCGG
  CCCCTACGGG GACGCAGCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52451853	NES15431691	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46249795					SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52451853	NES15431691	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87193956 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4937	CpG island 4937	within coordinates
Gstz1	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	within coordinates
Pomt2	protein-O-mannosyltransferase 2	within coordinates
Rr403429	regulatory region 403429	within coordinates
Rr403430	regulatory region 403430	341 bp upstream
Rr470321	regulatory region 470321	7 bp distal
Rr470322	regulatory region 470322	58 bp distal
Rr470323	regulatory region 470323	46 bp proximal
Rr470324	regulatory region 470324	303 bp proximal
Rr470325	regulatory region 470325	710 bp proximal
Tssr114506	transcription start site region 114506	within coordinates
Tssr114507	transcription start site region 114507	521 bp upstream
Tssr114508	transcription start site region 114508	603 bp upstream
Tssr114509	transcription start site region 114509	788 bp upstream
Tssr117156	transcription start site region 117156	236 bp downstream
Tssr117157	transcription start site region 117157	302 bp downstream
Tssr117158	transcription start site region 117158	701 bp downstream