rs46249981 SNP Detail

Summary

• ID
  rs46249981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:52847026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTTGATT TATTAATTTA
  CAGTGGAACG TAATCGTCAG GACAGGGGTG CCCATGACCT TGAAGACCAT CTGTGTACAG
  AAAAATGCCA GTTTTGTGCA TCTATTCCAA TGTTTCCCTA ATGGTCCAAA CCCAAGTTTC
  TTACCTGGTT ACTCTGCTCA TGTCTTAGTA GGAGTCTCAA GCTGGGGATG TCCGTTCGAT
  Y
  GCTCTGAGTG CTCCCCTACT TGCTCTGAGT GCTCCCCTAC TTGTCCCAGT TACGGTAGAG
  GGACCACTCT TTGCCTAGGC ATACATACAT CTCTATCAAC AGGAAACACA TCCCCCAGTT
  GTGCCTTCAA TTCATTCACT GCTGTGTAAC ACTACTGAGC CAGCCTGGCC CTTGCCTGCC
  TGGGTACTTA ATGCCTGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52422048	NES15408863	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	C	C	T	T	C	T	T
ss137742277	ENSMUSSNP1859526	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46249981					SNP	T	T	T	T	C	T	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52422048	NES15408863	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52847026 () rs orientation: forward

Symbol	Name	Function Class
Akap6	A kinase anchor protein 6	Intron
Gm51971	predicted gene, 51971	within coordinates
Gm59837	predicted gene, 59837	within coordinates
Rr466054	regulatory region 466054	235 bp distal