rs46252372 SNP Detail

Summary

• ID
  rs46252372
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172152115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTGGGTT TGTGCACCCT
  CCCCTCGGGG CAGATCATTT TGTTCCTACC TCAGAATCTT CCCCAACCGG AATCCATCTC
  AGAAACAGAG GAGTAAGCAT TCACTAATCA GAGACCGGCT CTGACATTGG AAGTCTGGCC
  CTGAGACATC TTGGGGTCAT TGGTATTCTT TGGCAAAGCT GGAATAAGAT GTATCAGGGA
  K
  GGTAGGGAAG GAGAGGCCAC CGGGGCCTCT GCAGGGAGAA GGCCTGAGAA GCAGAGGTAG
  GGCTTGGGGG AGTAGGGATA GGTGCAAAGT GGAGGCAGAG GCAGAGGGGG AAGAGAAGGC
  AGATGAAAAA GTCCCTGATA GAAACCTGTC CGAGATTGTG TCAGAGAGAG GGACAGCGCA
  GAGACAGAGG GAGCAGTGCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120012359	PARCsnp_1.08447	PARC_SEQ	INBRED	f	SNP		G	T
ss146187933	ENSMUSSNP1881365	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320124212	CHEV_1_174254679	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs46252372					SNP	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172152115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	996 bp proximal
Gm36937	predicted gene, 36937	887 bp downstream
Gm70847	predicted gene, 70847	1732 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	within coordinates
Rr423525	regulatory region 423525	357 bp proximal
Rr423526	regulatory region 423526	547 bp proximal
Rr423527	regulatory region 423527	1242 bp proximal
Rr423528	regulatory region 423528	1349 bp proximal
Rr423529	regulatory region 423529	1764 bp proximal
Tssr15210	transcription start site region 15210	1670 bp downstream
Tssr15211	transcription start site region 15211	1680 bp downstream
Tssr15212	transcription start site region 15212	1700 bp downstream