rs46253108 SNP Detail

Summary

• ID
  rs46253108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52562273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTGGGGT TCGTATGATA
  AATTTAACTT CAGCTATAGA ACCAGACCAA AAAGTTTTAC AAAACAAAAT ACCATGACAT
  TCATTTACTG GAAAACTATT CTGAGTGCAC AATATGAACC AGCATTGTAT AAGTCGCAAG
  AAATGCTCTA CAGGTGAGGG AAATGGAACA AATTACCTAC AGAGTGTCCC TACAAAAGCT
  Y
  GGAGCTGAAC AGGAAAAACC AGAATCAACT AGAAGTGGTG GGTGCACCAG ACAGATTTGT
  TAGTGTGAAC ATTTTTTTCT TTCTCCATTT TCATGTATGT GTGAGGGTGC ATGCATGTAT
  GCATGTTTGC ATCTGTGTGG GTACATGTGA CTATGGGTGC TGGCCCATAC ATGTGTACGA
  GCATTGGAGG CATAAGGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60732789	NES16374960	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46253108					SNP	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60732789	NES16374960	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52562273 () rs orientation: forward

Symbol	Name	Function Class
Gm553	predicted gene 553	within coordinates
Gm53065	predicted gene 53065	within coordinates
Rps27a-ps1	ribosomal protein S27A, pseudogene 1	413 bp downstream
Rr410875	regulatory region 410875	1133 bp distal
Rr410876	regulatory region 410876	933 bp proximal