rs46254074 SNP Detail

Summary

• ID
  rs46254074
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76498848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGCTGCTGC TGGACCAAGG CAGGGGTCAG TTGGGCCCAG
  GCCTGAGGGC TCACCCCAGC CTCTTCAGAT AGCCCATACA CAGCCATTAT ATCTTTGGCA
  S
  TCAGGCACAG CTGGAGGCAA AGAGAACAGG ACAGGAGTCA GGTGTCTGAA CAGACCCATG
  GAAGGTTGTC TTCTTTCTCC AGAATGGCAT GAGTGGCGTA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63562829	NES17021999	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46254074					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63562829	NES17021999	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76498848 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7242	CpG island 7242	1205 bp distal
Gm62519	predicted gene, 62519	within coordinates
Rr311946	regulatory region 311946	1447 bp distal
Rr311947	regulatory region 311947	1552 bp proximal
Slc39a4	solute carrier family 39 (zinc transporter), member 4	within coordinates
Tssr131805	transcription start site region 131805	1998 bp upstream
Tssr135019	transcription start site region 135019	1933 bp upstream
Tssr135020	transcription start site region 135020	1686 bp upstream
Tssr135021	transcription start site region 135021	1676 bp upstream
Tssr135022	transcription start site region 135022	397 bp upstream
Tssr135023	transcription start site region 135023	281 bp upstream
Tssr135024	transcription start site region 135024	393 bp downstream
Tssr135025	transcription start site region 135025	1264 bp downstream
Tssr135026	transcription start site region 135026	1810 bp downstream