rs46256753 SNP Detail

Summary

• ID
  rs46256753
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85426806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CTGTCTGTCC AGCTCTCTGC CTCTGTCCAC CTGCCCCACT
  GCAAGAGCTT CAATGTCCCC TTCACCTACT AAAGTGTATG CTGCTGTTGG CTGTGGTGTA
  R
  AAAGCCCTGC CTGATTTGAC TCCTATACCC ACTCCACTCT TGTTTCCTCT TTCCCATGTT
  AAAGCTGTAC TGGCTTTTCA GTGTCTTTAT CTTTTTGGGT C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133351679	ENSMUSSNP1402286	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46256753					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85426806 () rs orientation: forward

Symbol	Name	Function Class
Cct7	chaperonin containing TCP1 subunit 7	1690 bp upstream
Cpgi17646	CpG island 17646	927 bp proximal
Pradc1	protease-associated domain containing 1	within coordinates
Rr633222	regulatory region 633222	322 bp proximal
Rr633223	regulatory region 633223	703 bp proximal
Rr633224	regulatory region 633224	1414 bp proximal
Rr633225	regulatory region 633225	1701 bp proximal
Tssr57418	transcription start site region 57418	1664 bp upstream
Tssr61752	transcription start site region 61752	1397 bp downstream