rs46258302 SNP Detail

Summary

• ID
  rs46258302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151254300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCCTCGA ACTCAGAAAT
  CCGCCTGCCT CTGCCTCCCG AGTGCTGGGA TTAAAGGCGT GCGCCACCAT GCTTATCCTA
  AAAACCACTT AGACAAACTA TGATCCAAAA TGAGATAAAA TAACCTTTAA ATATTAATAA
  TGAAATGAAT TTTTAAAAGC TGTAAAAGGG AAAACTATTA TTTCCTAAAT AGGACAAAAA
  Y
  TTAAATCACA CATGTATAAA ATCTCAACAA TCATAAGACC ACATTGCCTC TCACACAGTA
  TTTCAGTTTG TTGTATTGTG AAACTGTATC TGAGGAATTA AGTTGTTAAA AATTAATGTA
  TTTGTTTTAG AGGAGTAGTG ATATTAACAT ATTACTTCCA TGAGCATATG TGCCCAAATG
  TGCCTGTACT GTCCCAGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss60818939	NES16490526	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs46258302					SNP	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60818939	NES16490526	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151254300 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr420286	regulatory region 420286			1011 bp distal
Swt1	SWT1 RNA endoribonuclease homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant