rs46259081 SNP Detail

Summary

• ID
  rs46259081
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62022101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCATAGCA GGTGACCCCC
  GAGACCGGCT GGCAAAGCTC TGTGGTTTTA TTTTTCTTGA GAGGCAAGAG ACAGCTTTGT
  CATTCAGAGG GCATATAGAA ACTCGGGTCT GGGTAGGCAC CAACCCCCAT CCCTGATGGC
  AGAGAGAGGG AGAATGACAG AGTCACCAGC CTCTGATCCC CTCTGAGTGC CCCAGCCATA
  Y
  TGCTATACTA CAGGATTCTG AGGATGGCTA GAGCCAGGGC CAGAAGGCTC ACCACCCAGC
  CCTGTGCCCT GATCAAAGGG GCTCAGTGGA GCCACGAGAT AAAGAGCTTT CAGGCCCCAA
  ATTCCATAAA CGGGGAGTGG TGGGACTCAC CGTGATCCCA GCATTCACGA GAAAGCAGCC
  CAGGAATCAG GAGCTTAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss61279721	NES16893294	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs46259081					SNP	C	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61279721	NES16893294	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62022101 () rs orientation: forward

Symbol	Name	Function Class
Rr215629	regulatory region 215629	300 bp proximal
Rr219987	regulatory region 219987	1300 bp proximal
Rr228220	regulatory region 228220	22 bp proximal
Tspan15	tetraspanin 15	within coordinates
Tssr97791	transcription start site region 97791	1164 bp downstream