rs46259462 SNP Detail

Summary

• ID
  rs46259462
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158199616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TTCCTCCACC TATAGGCTCA TATACTTGAA TATTTGGTCC
  CTAGTTGGTA GAACTGCTTG GGACCATTAG GAAGTATGGC CTTGTTAGTG GAGGTATCAT
  R
  GGGGTGGGGC AGGAGAGCTT TGAGGCTCCA AAAGCCCATG CCATTCAGTT AGCTCCCTGC
  CTGGTGGTCC TATCACGTAT GTGAGCTCCC AGCTACTGTC C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148114081	ENSMUSSNP3607549	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46259462					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158199616 () rs orientation: forward

Symbol	Name	Function Class
Gm24411	predicted gene, 24411	1142 bp upstream
Gm26003	predicted gene, 26003	664 bp downstream
Gm75379	predicted gene, 75379	132 bp downstream
Snhg17	small nucleolar RNA host gene 17	within coordinates