rs46262483 SNP Detail

Summary

• ID
  rs46262483
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64645161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTATGA TAAGAGGAAT
  CTAACCGAAA CGATTGGCTT GCAAACATCT CGGCACTACT AAGTACAACA CACACAGGGC
  CATTCTATCA AAGCCTTGAG TTAGAGGTCC GCTCTGAGAA CCATGCTCTG CAGACCATGC
  TCTGAGGACC ACGCCCCGCT GTGAGAAAAA CAGAGCCGAC CTCACACCTT GGTACCTCCC
  M
  GTCTTCAATA GATTAAAAAG GACTGCAGCA AGAGCTTGCA AGCCTCTCTC TCACTTCCTC
  TCTCTTGCTC AGGAGAACTG TGAGAACTAA CTGTTGATCT GAAAGCAACC ATGATTTGCT
  ACAGAGGTGC GAGCTTGCAC AGAGACCTGT GAAATCCCAC AGAACACAGG AAGTGTCTAA
  TTCCGCTGGA TCGGGCTGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61173173	NES16687550	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46262483					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61173173	NES16687550	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64645161 () rs orientation: forward

Symbol	Name	Function Class
Gm57288	predicted gene, 57288	40 bp upstream
Rr118672	regulatory region 118672	1440 bp proximal
Rr122953	regulatory region 122953	1465 bp distal
Rr129656	regulatory region 129656	1841 bp proximal
Rr131555	regulatory region 131555	619 bp distal
Rr367844	regulatory region 367844	within coordinates
Tssr46401	transcription start site region 46401	34 bp upstream