rs46262560 SNP Detail

Summary

• ID
  rs46262560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34686637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCC AAAGATAAAT AATTTCACAT
  Y
  CACGCAAAAG GATATTCTTT AAATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146174473	ENSMUSSNP4634696	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321075207	CHEV_4_34633886	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs46262560					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34686637 () rs orientation: forward

Symbol	Name	Function Class
Cfap206	cilia and flagella associated protein 206	1922 bp downstream
Cpgi14121	CpG island 14121	141 bp proximal
Rr100808	regulatory region 100808	within coordinates
Rr398199	regulatory region 398199	586 bp upstream
Slc35a1	solute carrier family 35 (CMP-sialic acid transporter), member 1	within coordinates
Tssr41193	transcription start site region 41193	625 bp downstream
Tssr41194	transcription start site region 41194	675 bp downstream
Tssr41195	transcription start site region 41195	710 bp downstream
Tssr41196	transcription start site region 41196	745 bp downstream
Tssr41197	transcription start site region 41197	820 bp downstream