rs46262928 SNP Detail

Summary

• ID
  rs46262928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25422674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACACAGGT TCCTGGATGG
  AGGCAAGTCT GTTCTAAAGT GCAAGGATGG GTCTGGGAAG CAGCTGACCC TAGGCTGAAA
  CCCGAGAGCA GCAGCACACA AGGCAGTTCA AAGACCTGCT TCACAGTCTA CAATGTCAGC
  CTGGTCTCGC TCTTGGTGTG CCTTGGTAGT TCAATAAGCT TGCATGCACA AAGTGCTGGG
  Y
  ACTCAGGAAA TGGTGGCAAA TGGCCACTGT GAGAGCTGCT GAGAAAAGCA GTGGTGACAA
  GATGCTAGGA GCCTTTCATG CAGAGTGGAT CAGTAACCCA TTCCATCTCA TCAGCAAGCC
  TGGCATATTC ACTAGCTTTA TTTTAGAGAT GGAAGCTGAG GCTGGGGCTG GAGAGATGGC
  TCAGCGGTTA AGAACACTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60979900	NES16140049	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46262928					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60979900	NES16140049	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25422674 () rs orientation: forward

Symbol	Name	Function Class
Hnrnpul1	heterogeneous nuclear ribonucleoprotein U-like 1	within coordinates
Rr155557	regulatory region 155557	127 bp proximal
Rr160908	regulatory region 160908	74 bp distal
Rr170211	regulatory region 170211	674 bp distal
Tssr65169	transcription start site region 65169	352 bp downstream
Tssr71293	transcription start site region 71293	1521 bp upstream
Tssr71294	transcription start site region 71294	371 bp upstream
Tssr71295	transcription start site region 71295	293 bp upstream
Tssr71296	transcription start site region 71296	1484 bp downstream