rs46263560 SNP Detail

Summary

• ID
  rs46263560
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12851630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCAATCATG GCCCTTGGGA GCTAAAGGCA GGAAGATCAG
  GAGTTCCTTG ATGACCCTGT CAGTTCAAGG CCAAACTAGG CTGAAGGGAA CCCCACCTTA
  W
  AAAGCCAAGC AAATACATAA GGGAAAAGAT TGACGCCTGC GTGGAGAACG CACAGAGGGA
  AGAGGTGGGT TTTTCCAATG AGGACATGGC TTTAGGGAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146806663	ENSMUSSNP3402962	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46263560					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12851630 () rs orientation: forward

Symbol	Name	Function Class
Rr427711	regulatory region 427711	1111 bp proximal
Tssr92372	transcription start site region 92372	1067 bp downstream
Tssr92373	transcription start site region 92373	172 bp downstream
Tssr92374	transcription start site region 92374	343 bp upstream
Tssr92375	transcription start site region 92375	432 bp upstream
Tssr96740	transcription start site region 96740	1177 bp upstream
Tssr96741	transcription start site region 96741	282 bp upstream