rs46266496 SNP Detail

Summary

• ID
  rs46266496
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:66963936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT CTTCCAGGGG ACCTGGATTC
  M
  AGCTCCAATA GTCAAACTGC AGCTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145053556	ENSMUSSNP1052176	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss322686822	CHEV_8_69035183	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46266496					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66963936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20395	CpG island 20395	327 bp proximal
Gm63911	predicted gene, 63911	262 bp upstream
Tktl2	transketolase-like 2	472 bp upstream
Tssr77575	transcription start site region 77575	448 bp upstream
Tssr77576	transcription start site region 77576	467 bp upstream